Thresholds are based solely upon the application vendor's best practices. Microsoft in particular tends to have a ideological perspective when it comes to defining these "Best Practice" thresholds, which is in part one of the reasons why we developed the Threshold Baseline Calculator. As for additional details on individual components, are there any particular ones you're having difficulty with? We are making efforts to work with application vendors to improve the Expert Knowledge included within SAM's Application Templates, but if there are some specific components you feel are lacking significant detailed information that is important we'd like to know.
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